Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015908827.1_cds_XP_016459004.1_52575
CDS Infomation

[gene=LOC107782623] [db_xref=GeneID:107782623] [protein=eukaryotic translation initiation factor 3 subunit A] [partial=3'] [exception=annotated by transcript or proteomic data] [protein_id=XP_016459004.1] [location=join(60485..60530,60812..61293,61805..62020,62106..62474,62568..62597,62817..63044,63173..63334,64280..64501,64582..64785,64862..65068,65286..65366,65879..66080,66408..>66735)] [gbkey=CDS]
Sequence

ATGGCGACTTTTGCCAAACCTGAGAATGCTTTGAAGCGTGCTGAAGAGTTGATTACTGTT
GGACAAAAGCAAGAAGCGCTGCAAGCACTTCATGATCTTATTACTTCAAGGAGGTATAGA
GCATGGCAAAAAACTCTTGAAAGGATAATGTTCAAGTATGTAGAGCTATGTGTTGACATG
AGAAGGGGGAGGTTTGCCAAGGATGGCCTAATTCAATATCGTATAGTCTGTCAGCAAGTG
AACATTAACTCCTTAGAGGAGGTGATAAAGCATTTCATGCATTTAGCTACTGAGCGAGCT
GAACTGGCTCGCAATCAAGCACAGGCGTTGGAGGAAGCTCTGGATGTGGAGGACTTGGAA
GCTGATAAAAGGCCTGAAGATCTTATGTTGAGTTATGTTAGTGGGGAGAAAGGAAAAGAT
AGATCTGATCGCGAGCTTGTCACTCCCTGGTTTAAGTTTTTGTGGGAGACATATAGAACT
GTTCTGGAGATCTTGCGTAACAACTCAAGATTGGAGGCTCTGTATGCTATGACAGCACAC
CGAGCCTTTCAGTTCTGTAAGCAGTACAAACGTACAACAGAATTTCGTCGTCTTTGTGAA
ATCATCCGAAATCATTTGGCAAATCTCAACAAGTATAGAGATCAGAGGGACCGGCCCGAT
CTGTCTGCTCCAGAGAGCCTGCAATTGTATCTAGACACTAGATTTGAACAACTGAAAGTT
GCTACCGAACTGGGTCTTTGGCAGGAAGCTTTCCGTTCCATAGAAGACATATATGGATTG
ATGTGCATGGTTAAGAAAACCCCCAAGGCGTCATTGATGGTTGTTTACTATGGGAAGCTT
ACTGAGATATTTTGGATGTCATCAAATCATCTTTATCATGCTTATGCATGGCTCAAGCTT
TTTTCTCTTCAGAAGAGTTTTAATAAAAATTTAAGCCAGAAGGATTTGCAGTTAATAGCA
TCGTCTGTTGTCCTAGCTGCACTTTCAGTGCCTCCTTATGATCAGTTGTATGGTGCATCT
CATCTTGAGCTTGAAAATGAGAAGGAGAGGAGTTTGAGGGTGGCCAATCTAATAGGTTTC
GAAGTCGAACCCAAAGCTGAAAACAGAGTAGCGCTCTCCCGATCATCACTTCTTTCAGAG
TTGGTGTCCAAAGGTGTGATGTCCTGTGTCACCCAAGAAGTGAAAGATCTTTATCATCTG
TTAGAAAATGAGTTTCTTCCTTTGGATCTGGCACTGAAGGTGCAGCCCGTATTGAGCAAA
ATATCAAAGCTTGGCGGTAAGCTGTCTTCAGTTTCCTCAGTTCCTGAAGTACAACTGTCT
CAGTATGTTCCTGCCTTGGAAAAACTTGCTACTCTGAGGTTGCTCCAGCAGGTCTCTCAG
GTGTATCAGACAATTCAGATTGATAACATATCTAAGATGATCCCATTCTTTGACTTCACT
GTTATTGAGAAGATATCAGTTGATGCGGTTAGACGTAATTTTCTAGCTATCAAAGTTGAT
CACATGAAGGGCGCTGTCTTCTTTGGTAAACAGAGTATTGAGGCGGAAGGACTCCGGGAT
CATCTGTCTCTTTTGGCTGAATCCCTTAGCAACGCAAGGACAATGATTTGTCCCCCAGCA
AAGAAGACTGCCAAGCTTGGGGAAGCACTGTCTAATTTAGCGGAGATAGTGGAGAAGGAG
CACAAGAGACTTCTTGCCCGGAAGTCCATTATTGAGAAGCGCAAAGAGGAGCAAGAGCGT
TTACTCTTAGAAATGGAACGAGTGGAGGAAACTAAGAGGCGAGAGCTACAAAAGATGACT
GAAGAGGCTGAGCAAAAGCGCATTGCTGCCGAGTATGAGCAAAGAAGGAACCAACGAATT
TTGAAGGAGATAGAGGACCGAGAACTTGAAGAGGCCCAAGCTTTGCTGCACGAAGCTGAA
AAGCGCAGCAAGAGGAAGAAGAAGCCAGTCCTAGAGGGAGAAAAGATGACCAAACAGGTG
ATCATGGAATTGGCGCTGAATGAGCAACTGAGAGAGAGGCAAGAAATGGAAAAGAAGTTG
CTCAAATTTGCTAAAACTATGGATCATCTGGGGAGAGCTAAGAGAGAAGAAGCTGCACCT
CTTATTGAATCTGCATTTAAACAACGTTTAGCTGAAGAGGCAGCTCTTCATGAACGCGAG
CAGCAGCAAGAGATTGAGCTGAGCAGACAACGACATGCTGGAGACTTGGAAGAGAAAAGG
AGGCTGGGACGCATGTTGGAGAACAAGAGAATTTTGCAAGAAAAAGTTGTCAGTAGCCGA
GAAGCTGAATTCACTAGAATGAAATGGGAGAGACAGGAAAGGATCAGCCAGATAATTCAA
TCAAGGAAGCAGGAGAGGGAAGCTAGGAGGAAAATGATATTCTTCCTGCGATCTGAGGAG
GAGCGACAAAAGAGGTTGCAGGAGGAGGAGGAAGCCCGCAAACGTGAAGAGGCAGAGAGA
CGGAAGAAAGAGGAAGCTGAGCGGCAAGCCAAGTTAGATGAGATTGCAGAAAAGCAGAGG
CGACGAATGCTAGAACTTGAAGAGAAAGAAAAACGGGAGAGAGAAGAGATCTTGCGTAAG
TCCACTGCTGTGCTGCCAAAGCGTGCTGAGCCTCCAACCTTGGGGCGTCCCGCAGAACTT
GGTGGAGCTGCTCCAATTCCTGCTGCAGCAGCTACTGCACCTACTCCTGGCCCTGGGAAA
TATGTTCCTAGGCACTTACGAGCGAAAATGGATGGTGCAGGCCAGGCTCCACCTCCTGAA
ACTGACAAGTGGGGCGG

Peptide Sequence

PEP ID

XP_016459004.1
PEP Infomation

PREDICTED: eukaryotic translation initiation factor 3 subunit A [Nicotiana tabacum]
Sequence

MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM
RRGRFAKDGLIQYRIVCQQVNINSLEEVIKHFMHLATERAELARNQAQALEEALDVEDLE
ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSRLEALYAMTAH
RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKV
ATELGLWQEAFRSIEDIYGLMCMVKKTPKASLMVVYYGKLTEIFWMSSNHLYHAYAWLKL
FSLQKSFNKNLSQKDLQLIASSVVLAALSVPPYDQLYGASHLELENEKERSLRVANLIGF
EVEPKAENRVALSRSSLLSELVSKGVMSCVTQEVKDLYHLLENEFLPLDLALKVQPVLSK
ISKLGGKLSSVSSVPEVQLSQYVPALEKLATLRLLQQVSQVYQTIQIDNISKMIPFFDFT
VIEKISVDAVRRNFLAIKVDHMKGAVFFGKQSIEAEGLRDHLSLLAESLSNARTMICPPA
KKTAKLGEALSNLAEIVEKEHKRLLARKSIIEKRKEEQERLLLEMERVEETKRRELQKMT
EEAEQKRIAAEYEQRRNQRILKEIEDRELEEAQALLHEAEKRSKRKKKPVLEGEKMTKQV
IMELALNEQLRERQEMEKKLLKFAKTMDHLGRAKREEAAPLIESAFKQRLAEEAALHERE
QQQEIELSRQRHAGDLEEKRRLGRMLENKRILQEKVVSSREAEFTRMKWERQERISQIIQ
SRKQEREARRKMIFFLRSEEERQKRLQEEEEARKREEAERRKKEEAERQAKLDEIAEKQR
RRMLELEEKEKREREEILRKSTAVLPKRAEPPTLGRPAELGGAAPIPAAAATAPTPGPGK
YVPRHLRAKMDGAGQAPPPETDKWGGGSKPDDRPSWRDERKPSSFGSGSRTSWPASRQ

Transcript Sequence

Gene sequence data has not been registered.